miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|38474352|gb|CF958484.1|CF958484 GCACGAGGCTCGTGCTTTCCCTTCAGTAGTTAAGCGTAGAGAATTTGAGGCCATGGCAATCAGCAGAAGGAGCTCCATGC
TGTTGGTGATGGCCTTAGTGCTTGGGACGGTCTCCCTTGCCACGGCCGCATCTGGAGTCGCCACCTTCTACACTCAATAC
ACACCGTCGGCGTGCTACGGGAACAGGAACATGGGGAACATGGTGGCGGCGGCGAACGACAGGTTGTACAACAACGGCGC
CGTGTGCGGGCGGTGCTACGCCGTGAAGTGCGCCGGCGCGGCGGCCGGCGGCGGCGGAGGCAACCCCTGCACCGGCGCCA
GCGTCACCGTGAAGATGGTCGACAACTGCGCCAGCAGCGACGGGTGCACGAGCACCATCGACCTCTCCAGGGAGGCCTTC
GCCAAGATCGCCAACCTCGACGCCGGCGTCATCAGGATCACCTACAACCCAACGGTATGTCCGTAGAGTTTCGGAGCTAC
TTCCTCCATTTCACAATATAAGTCATTCTAGTATTTTCCACATTAACATCAATGTATCTAGATTCATTAATATCAAAATA
AATGTGGAAAATGCTAGAATAACTTACATTGTGAAATGGAGGGAGTAGACCATATAATTATTATTATGGTCATC




Most similar to sp|Q9M0C2|EGC1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M0C2|EGC1_ARATH Putative EG45-like domain containing protein 1
           OS=Arabidopsis thaliana GN=EGC1 PE=2 SV=1
          Length = 123

 Score =  114 bits (286), Expect = 4e-25
 Identities = 62/126 (49%), Positives = 81/126 (64%)
 Frame = +2

Query: 74  SMLLVMALVLGTVSLATAASGVATFYTQYTPSACYGNRNMGNMVAAANDRLYNNGAVCGR 253
           S++    +++   S + A  G+ATFYT YTP  CY     G M+AAA+D L++NG VCG+
Sbjct: 4   SIVFFSTVLVFLFSFSYATPGIATFYTSYTP--CYRGTQEGVMIAAASDTLWDNGRVCGK 61

Query: 254 CYAVKCXXXXXXXXXXNPCTGASVTVKMVDNCASSDGCTSTIDLSREAFAKIANLDAGVI 433
            + VKC          +PCTG SV VK+VD+C S  GC ST+DLSREAFA+IAN  AG+I
Sbjct: 62  MFTVKCSGPRNAVP--HPCTGKSVKVKIVDHCPS--GCASTLDLSREAFAQIANPVAGII 117

Query: 434 RITYNP 451
            I Y P
Sbjct: 118 NIDYFP 123